VMD Selection for a Given Docking Box

Docking programs like AutoDock Vina and Schrödinger’s Glide typically require users to specify a docking box. VMD is a popular program for molecular visualization. I often want to visualize the receptor atoms that fall within a given docking box in VMD. This little app generates the VMD selection of these atoms.

Box center (x,y,z):

Box dimensions (x,y,z):

VMD selection:

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